Amid the hustle of everyday life, I stumbled upon a delightful twist on pizza that completely changed my weeknight meals: Spaghetti Squash Pizza Nests. This low-carb, gluten-free recipe offers all the mouthwatering goodness of pizza, but without the guilt—perfect for anyone craving a satisfying snack or appetizer without straying from their healthy lifestyle. Imagine a cozy evening sharing these savory, cheesy nests that feel indulgent yet keep you on track. With quick prep and the flexibility to customize toppings, these nests are sure to impress family and friends alike. Curious about how to craft this delectable dish and make it your own? Let’s dive in!

Why Are These Nests a Game-Changer?
Delightful, Healthy Twist: These Spaghetti Squash Pizza Nests reinvent pizza, bringing a nutritious, guilt-free option to your table.
Easy Preparation: The baking process is a breeze, with minimal steps and common ingredients that make it perfect for any weeknight meal.
Customizable Options: Embrace creativity! These nests are perfect for experimenting with various toppings, whether you prefer classic pepperoni or a medley of fresh veggies.
Crowd-Pleaser: Whether for a family dinner or as party appetizers, these tasty little nests are guaranteed to win over both kids and adults.
Keto-Friendly Delight: With only 2g net carbs per serving, they easily fit into low-carb and keto diets, satisfying cravings without the extra carbs.
For those excited to explore more low-carb delights, check out Savory Butternut Squash or our Pepperoni Ricotta Pizza for even more inventive ideas!
Spaghetti Squash Pizza Nests Ingredients
For the Nests
• Spaghetti Squash – This is the star of the dish; choose a medium-sized squash for the perfect noodle quantity.
• Eggs – They act as a binding agent for the noodles; a flax egg serves as a great vegan substitute.
• Mozzarella Cheese – Provides a creamy texture and helps bind the nests; try vegan cheese for dairy-free options.
For the Sauce
• Tomato Sauce – Adds moisture and classic flavor; opt for sugar-free varieties to keep it low-carb.
• Garlic Powder – Elevates the flavors; fresh garlic can substitute for a fresher taste.
• Italian Seasonings – A mix of classic herbs enhances the overall flavor; feel free to adjust according to preference.
• Oregano – Complements the tomato sauce beautifully, adding a rich layer of aroma.
• Sea Salt – Essential for bringing out the best flavors; adjust the amount to your taste preference.
For Toppings
• Pepperoni – Adds that beloved pizza taste; select uncured and nitrate-free options if desired.
• Basil – Fresh or lightly dried, it provides a lovely finish; parsley can be used as an alternative for a different twist.
Indulge in making these Spaghetti Squash Pizza Nests your own with delightful toppings or mix-ins to unveil even more flavor. Enjoy the journey of creativity in the kitchen!
Step‑by‑Step Instructions for Spaghetti Squash Pizza Nests
Step 1: Preheat the Oven
Begin by preheating your oven to 400°F (204°C). While it warms up, prepare a baking sheet by lining it with parchment paper or greasing it lightly. This is essential for the Spaghetti Squash Pizza Nests to bake evenly and prevent sticking, creating a lovely golden finish.
Step 2: Bake the Squash
Using a knife, poke several holes into the spaghetti squash to allow steam to escape as it bakes. Place the squash on your prepared baking sheet and bake for approximately 1 hour, turning it halfway through. You’ll know it’s done when the skin feels tender, and the spaghetti-like strands begin to separate easily.
Step 3: Cool the Squash
Once baked, carefully remove the squash from the oven and allow it to cool for about 15-20 minutes. This resting period ensures the squash is manageable to handle without burning your fingers. Meanwhile, prepare your muffin pans to hold the delightful nests, greasing them to ensure easy extraction later.
Step 4: Prepare the Muffin Pans
Grease two muffin pans generously with cooking spray or oil, making sure to coat each cup thoroughly. This will prevent the delicious Spaghetti Squash Pizza Nests from sticking and help them release easily after baking. Keep your muffin pans handy as they will soon hold the flavorful mixture.
Step 5: Mix the Sauce
In a mixing bowl, combine your tomato sauce, garlic powder, Italian seasonings, and oregano. Stir these ingredients together until they are well blended, creating a rich, fragrant sauce that will enhance the flavor of your nests. Set this mixture aside for later assembly.
Step 6: Shred the Squash
Once the spaghetti squash has cooled enough to handle, slice it in half lengthwise and scoop out the seeds. Using a fork, gently scrape the flesh to create the spaghetti-like strands and transfer them to a large mixing bowl. You want light, airy strands to form the base of your pizza nests.
Step 7: Combine Ingredients
In the bowl with the fluffy squash strands, crack the eggs and mix until everything is well combined. Then, stir in a generous scoop of the prepared tomato sauce mixture, ensuring the squash is evenly coated. This mixture will provide the binding and flavorful base for your Spaghetti Squash Pizza Nests.
Step 8: Create the Nests
Spoon the squash mixture into the greased muffin cups, filling them about three-quarters full. Use your fingers or the back of a spoon to form wells in the center of each nest. Top each well with additional tomato sauce, a slice of pepperoni, and sprinkle generously with mozzarella cheese and fresh basil.
Step 9: Bake the Nests
Place the filled muffin pans in your preheated oven and bake for 25 minutes. Watch them closely, and you’ll notice they’ll set and turn a delightful golden brown. The cheese should be melted and bubbly, giving a perfect visual cue that your Spaghetti Squash Pizza Nests are ready to shine.
Step 10: Cool and Serve
After baking, let the nests cool in the pans for a few moments before gently removing them with a fork. This cooling time helps them hold their shape. Serve your delightful nests warm, either as a tasty appetizer or a wholesome part of a family meal.

Expert Tips for Spaghetti Squash Pizza Nests
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Fluff the Noodles: Use a fork to fluff up the spaghetti squash strands. This step enhances the nests’ texture, giving them a light and airy feel.
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Avoid Overcrowding: When filling the muffin tins, ensure nests aren’t overcrowded. Spacing allows for even baking and a perfectly crispy exterior.
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Check for Doneness: Keep an eye on the nests as they bake; they should be golden brown and set. Overbaking can make them dry, while underbaking leaves them mushy.
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Customize Toppings: Don’t hesitate to mix in veggies or swap proteins! Experimenting with toppings in your Spaghetti Squash Pizza Nests can lead to delicious new flavors.
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Store Correctly: If you have leftovers, store them in an airtight container in the refrigerator. These nests can last up to a week and can be reheated easily.
How to Store and Freeze Spaghetti Squash Pizza Nests
Fridge: Store your leftover Spaghetti Squash Pizza Nests in an airtight container for up to 5 days. Reheat in the microwave for a quick snack or meal.
Freezer: For longer storage, place the baked nests in a freezer-safe container. They can be frozen for up to 3 months. Thaw in the fridge before reheating.
Reheating: To reheat, simply place the nests in the oven at 350°F (175°C) for about 15-20 minutes until heated through. This helps maintain their crispy exterior.
Make-Ahead Tip: Prepare the nests in advance and freeze them before baking. When ready, bake straight from frozen, adding an extra 5-10 minutes to the cooking time.
What to Serve with Spaghetti Squash Pizza Nests?
Delightful meals are best enjoyed with thoughtful pairings that elevate your dining experience.
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Mixed Green Salad: A light and refreshing salad balances the savory flavors of the nests, providing a crisp texture and healthy greens.
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Garlic Breadsticks: Perfect for dipping into any extra tomato sauce, these breadsticks add a comforting, indulgent touch to your meal.
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Roasted Vegetables: Seasoned and caramelized, roasted veggies add depth and nutrition, complementing the textures of the pizza nests beautifully.
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Steamed Broccoli: Bright green and nutritious, steamed broccoli offers a beautiful color contrast, bringing freshness and crunch alongside every savory bite.
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Zucchini Noodles: For a low-carb twist, serve these alongside your nests—they mimic pasta’s texture while coupling well with pizza flavors.
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Red Wine: A glass of dry red wine enhances the meal, adding complexity and warmth while accentuating the savory elements of your dinner.
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Chocolate Mousse: End on a sweet note with a rich, creamy mousse that feels lavish yet is easy to make, rounding out your low-carb meal with dessert.
With these thoughtful pairings, your Spaghetti Squash Pizza Nests can shine even brighter at the dinner table!
Make Ahead Options
These Spaghetti Squash Pizza Nests are a fantastic option for meal prep lovers! You can prepare the nests up to 24 hours in advance by baking them and then refrigerating them in an airtight container. For best results, allow them to cool completely before storing to maintain their texture. If you prefer to freeze them, do so after baking and cooling; simply place them in freezer-safe containers for up to 3 months. To reheat, pop them in a preheated oven at 350°F (175°C) for 15-20 minutes until warmed through and the cheese is bubbly. With these make-ahead tips, you can enjoy delicious, guilt-free pizza without the fuss on busy weeknights!
Spaghetti Squash Pizza Nests Variations
Make your Spaghetti Squash Pizza Nests truly your own with these fun riffs and swaps that spark creativity in the kitchen!
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Veggie Delight: Add a colorful mix of sautéed bell peppers, zucchini, or mushrooms into your nests for a nutrition boost. The veggies provide great texture and flavor that even picky eaters will enjoy.
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Spicy Kick: Toss in red pepper flakes or jalapeños to amp up the heat levels. This variation is perfect for those who crave a bit of spice in their meals!
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Meat Lovers: Swap out pepperoni for ground turkey, mini meatballs, or cooked sausage for a heartier bite. Each option complements the nests beautifully and maintains the pizza theme.
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Dairy-Free: Use a vegan cheese substitute in place of mozzarella for a completely dairy-free version. This way, everyone can enjoy these delicious nests without worry.
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Herb Infusion: Experiment with fresh herbs like oregano, thyme, or even a touch of rosemary to elevate the flavor. Fresh herbs introduce aromatic layers that are delightful and refreshing.
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Pesto Base: Trade the tomato sauce for basil pesto for a unique twist. The rich flavor of pesto pairs wonderfully with the squash, creating a gourmet experience that’s irresistible.
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Salsa Surprise: For something different, use salsa as a topping instead of tomato sauce. The zest from the salsa brings a fantastic flavor combo to your nests.
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Crunchy Toppings: Top your nests with crushed nuts or seeds before baking for a delightful crunch. This adds a new texture that contrasts beautifully with the soft nests.
With so many variations, your Spaghetti Squash Pizza Nests can be a new culinary adventure every time you make them! If you’re looking for more creative ideas, don’t miss our tips for a Spicy Southern Cheesy Chicken Spaghetti Casserole or the flavors of Savory Butternut Squash for even more inspiration.

Spaghetti Squash Pizza Nests Recipe FAQs
How do I select the perfect spaghetti squash?
Absolutely! When selecting spaghetti squash, look for medium-sized ones with a firm, smooth skin. They should feel heavy for their size and have a vibrant yellow color. Avoid any squash with dark spots or blemishes, as this indicates ripeness issues.
How should I store leftover spaghetti squash pizza nests?
Very simply! Store your leftover Spaghetti Squash Pizza Nests in an airtight container in the refrigerator for up to 5 days. When it comes time to enjoy them again, a quick microwave reheat works wonders, keeping them deliciously satisfying.
Can I freeze spaghetti squash pizza nests?
Yes, indeed! To freeze your nests, allow them to cool completely, then place them in a freezer-safe container or a resealable freezer bag. They can be frozen for up to 3 months. Just remember to thaw them in the fridge before reheating for best results!
What should I do if my nests are too soggy?
If your nests turn out soggy, don’t fret! It often happens if the spaghetti squash had too much moisture. To fix this for next time, be sure to fluff the strands well, and allow excess moisture to drain from the mixture before forming the nests. Additionally, if you’re using zucchini, slice it thin and sauté it briefly to remove moisture.
Are these nests safe for my gluten-sensitive family?
Absolutely! These Spaghetti Squash Pizza Nests are gluten-free. However, if you’re adding toppings, double-check the labels to ensure they’re gluten-free as well. Companies often produce gluten-free sauces and cheeses, so there’s plenty of room for customization!
Can I make these nests vegan?
Certainly! To create a vegan version of the nests, simply substitute the eggs with a flax egg (1 tablespoon ground flaxseed mixed with 2.5 tablespoons water, let sit for 5 minutes until thickened). Also, swap out mozzarella cheese for your favorite dairy-free cheese to keep this recipe guilt-free and delightful for everyone!

Delicious Spaghetti Squash Pizza Nests: Low-Carb Fun
Ingredients
Equipment
Method
- Preheat your oven to 400°F (204°C) and prepare a baking sheet.
- Poke holes into the spaghetti squash and bake for about 1 hour.
- Allow the squash to cool for about 15-20 minutes.
- Grease two muffin pans generously.
- Combine tomato sauce, garlic powder, Italian seasonings, and oregano in a bowl.
- Shred the cooked spaghetti squash and transfer to a mixing bowl.
- Mix in eggs and tomato sauce until well combined.
- Spoon the mixture into muffin cups, creating wells in the centers.
- Top each nest with additional sauce, pepperoni, cheese, and basil.
- Bake for 25 minutes until golden brown.
- Let the nests cool briefly before serving.

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